Publications

1. Kriti Shukla, Yue Wang, Philip M. Spanheimer, Elizabeth Brunk. AI-Driven Variant Annotation for Precision Oncology in Breast Cancer. BioRXiv. (2025) DOI:10.1101/2025.03.14.6433, Accpeted at Clin. Transl. Sci.

2. Kriti Shukla, Kelvin Idanwekhai, Martin Naradikian, Stephanie Ting, Stephen P. Schoenberger, Elizabeth Brunk. Machine Learning of Three-Dimensional Protein Structures to Predict the Functional Impacts of Genome Variation. Journal of Chemical Information and Modeling. (2023). DOI: 10.1021/acs.jcim.3c01967

3. Rebecca Brunk, Kriti Shukla et al. Data Science for Biochemists: Integrating and evaluating the use of interactive digital Python notebooks in a large enrollment undergraduate biochemistry course. ACS Journal of Chemical Education. (2024) DOI: 10.1021/acs.jchemed.4c00167

4. Kohen Goble, …, Kriti Shukla, Elizabeth Brunk. Leveraging AI to Automate Detection and Quantification of Extrachromosomal DNA (ecDNA) to Decode Drug Responses. Frontiers in Systems Pharmacology. (2025) DOI: 10.1101/2024.10.23.619848